Fachgebiet für Mikrobielle Ökologie bei Nutztieren

Publikationen

2024

2024

  1. Sarpong N, Seifert J, Bennewitz J, Rodehutscord M, Camarinha-Silva A. 2024 Microbial signatures and enterotype clusters in fattening pigs: implications for nitrogen utilization efficiency. Frontiers in Microbiology 15. doi: 10.3389/fmicb.2024.1354537
  2. Schmid M, Weishaar R, Seifert J, Camarinha-Silva A, Rodehutscord M, Bennewitz J. 2024. Genomic analyses of nitrogen utilization efficiency, its indicator trait blood urea nitrogen and the relationship to classical growth performance and feed efficiency traits in a Landrace × Piétrain crossbred population. Journal of animal breeding and genetics doi: 10.1111/jbg.12864
  3. Guilherme-Fernandes J, Aires T, Fonseca AJM, Yergaliyev T, Camarinha-Silva A, Lima SAC, Maia MRG, Cabrita ARJ. 2024. Squid meal and shrimp hydrolysate as novel protein sources for dog food. Frontiers Veterinary Sciences. 11:1360939. doi: 10.3389/fvets.2024.1360939
  4. Brandt A, Csarmann K, Hernández-Arriaga A, Baumann A, Staltner R, Halilbasic E, Trauner M, Camarinha-Silva A, Bergheim I. 2024. Antibiotics attenuate diet-induced nonalcoholic fatty liver disease without altering intestinal barrier dysfunction. Journal Nutrition Biochemistry. 123:109495. doi: 10.1016/j.jnutbio.2023.109495
  5. Rios-Galicia B, Sáenz JS, Yergaliyev T, Roth C, Camarinha-Silva A*, Seifert J*. 2024. Novel taxonomic and functional diversity of eight bacteria from the upper digestive tract of chicken. International Journal of Systematic and Evolutionary Microbiology 74 (1). doi: 10.1099/ijsem.0.006210
  6. Brandt A, Hernández-Arriaga A, Yergaliyev T, Nier A, Halilbasic E, Trauner M, Camarinha-Silva A, Bergheim I. 2024. Short-term intake of fiber-rich oat bran but not spelt bran flake mix lowers bacterial endotoxin levels and improves health parameters in healthy, normal weight, young to middle-aged women. Journal of Functional Foods 112. doi: 10.1016/j.jff.2023.105929
  7. Jaeger JW, Brandt A, Gui W, Yergaliyev T, Hernández-Arriaga A, Marutha Muthu M, Edlund K, Elashy A,  Molinaro A, Möckel D, Sarges J, Halibasic E, Trauner M, Kahles F, Rolle-Kampczyk U, Hengstler J, Schneider CV, Lammers T, Marschall HU, Bergen M, Camarinha-Silva A, Bergheim I, Trautwein C, Schneider KM. 2024. JHEP Reports 100987. doi: 10.1016/j.jhepr.2023.100987

2023

2023

  1. Dahl SA, Seifert J, Camarinha-Silva A, Cheng YC, Hérnandez-Arriaga A, Hudler M, Windisch W, König A. 2023. Microbiota and nutrient portraits of european roe deer (Capreolus capreolus) rumen contents in characteristic southern german habitats. Microbial Ecology doi: 10.1007/s00248-023-02308-5
  2. Rajcic D, Kromm F, Hernandez-Arriaga A, Brandt A, Baumann A, Staltner R, Camarinha-Silva A, Bergheim I. 2023. Supplementing L-Citrulline can extend lifespan in C. elegans and attenuate the development of aging-related impairments of glucose tolerance and intestinal barrier in mice. Biomolecules 13(11), 1579. doi:10.3390/biom13111579
  3. Avila Santos AP, Kabiru Nata’ala M, Coelho Kasmanas J, Bartholomäus A, Keller-Costa T, Jurburg SD, Tal T, Camarinha-Silva A, Saraiva JP, Carvalho A, Stadler PF, Sanches DS, Rocha U. 2023. The AnimalAssociatedMetagenomeDB reveals a bias towards livestock and developed countries and blind spots in functional-potential studies of animal-associated microbiomes. Animal Microbiome doi: 10.1186/s42523-023-00267-3
  4. Cabrita ARJ, Guilherme-Fernandes J, Spínola M, Maia MRG, Yergaliyev T, Camarinha-Silva A, Fonseca AJM. 2023. Effects of microalgae as dietary supplement on palatability, digestibility, fecal metabolites, and microbiota in healthy dogs. Frontiers Veterinary Sciences 10 doi: 10.3389/fvets.2023.1245790
  5. Berghaus D, Haese E, Weishaar R, Sarpong N, Kurz A, Seifert J, Camarinha-Silva A, Bennewitz J, Chillon T, Stefanski V, Rodehutscord M. 2023. Nitrogen and lysine utilization efficiencies, protein turnover, and blood urea concentrations in crossbred grower pigs at marginal dietary lysine concentration. Journal of Animal Science skad335 doi: 10.1093/jas/skad335
  6. Dahl SA, Seifert J, Camarinha-Silva A, Hérnandez-Arriaga A, Windisch W, König A. 2023. “Get the best out of what comes in” – adaptation of the microbiota of chamois (Rupicapra rupicapra) to seasonal forage availability in the Bavarian Alps. Frontiens Microbiology 14 doi: 10.3389/fmicb.2023.1238744
  7. Galicia BR, Saénz JS, Yergaliyev T, Camarinha-Silva A, Seifert J. 2023.Host specific adaptations of Ligilactobacillus aviarius to poultry. Current Research in Microbial Sciences doi: 0.1016/j.crmicr.2023.100199
  8. Brandt A, Kromm F, Hérnandez-Arriaga A, Sánchez IM, Bozkir HO, Staltner R, Baumann A, Camarinha-Silva A, Heijtz RD, Bergheim I. 2023. Cognitive alterations in old mice are associated with intestinal barrier dysfunction and induced toll-like receptor 2 and 4 signaling in different brain regions. Cells 2023, 12, 2153 doi: 10.3390/cells12172153
  9. Klein N, Sarpong N, Melzer T, Feuerstein D, Heyer CME, Camarinha-Silva A, Rodehutscord M. 2023. Effect of dietary calcium concentration and exogenous phytase on inositol phosphate degradation, mineral digestibility, and gut microbiota in growing pigs. Journal of Animal Science 101skad254  doi: 10.1093/jas/skad254
  10. Amin N, Schwarzkopf S, Tröscher-Mußotter J, Camarinha-Silva A, Dänicke S, Huber K, Frahm J, Seifert J. 2023. Host metabolome and faecal microbiome shows potential interactions impacted by age and weaning times in calves. Animal Microbiome. 5. 12. doi: 10.1186/s42523-023-00233-z
  11. Lazzari G, Münger A, Eggerschwiler L, Borda-Molina D, Seifert J, Camarinha-Silva A, Schrade S, Zähner M, Zeyer K, Kreuzer M, Dohme-Meier F 2023. Effects of Acacia mearnsii added to silages differing in nutrient composition and condensed tannins on ruminal and manure-derived methane emissions of dairy cows. Journal of Diary Science 106 doi: 10.3168/jds.2022-22901
  12. Haas V, Rodehutscord M, Camarinha-Silva A ,Bennewitz J (2023) Inferring causal structures of gut microbiota diversity and feed efficiency traits in poultry using Bayesian learning and genomic structural equation models. Journal of Animal Science  doi:10.1093/jas/skad044
  13. Lazzari G, Münger A, Heimo D, Seifert J, Camarinha-Silva A, Borda-Molina D, Zähner M, Schrade S, Kreuzer M, Dohme-Meier F. 2023. Effects of tanniferous sainfoin and Acacia mearnsii extract on urinary N excretion and ammonia volatilization from the slurry of dairy cows. Animal Feed Science and Technology 297 doi: 10.1016/j.anifeedsci.2023.115577
  14. Ponsuksili S, Hadlich F, Perdomo-Sabogal A, Reyer H, Oster M, Trakooljul N, Iqbal MA, Schmucker S, Stefanski V, Roth C, Camarinha-Silva A, Huber K, Sommerfeld V, Rodehutscord M, Wimmers K. 2023. The dynamics of molecular, immune and physiological features of the host and the gut microbiome, and their interactions before and after onset of laying in two hen strains. Poultry Science 102256 doi:10.1016/j.psj.2022.102256

2022

Tröscher-Mußotter J, Deusch S, Borda-Molina D, Frahm J, Dänicke S, Camarinha-Silva A, Huber K and Seifert J (2022) Cow’s microbiome from antepartum to postpartum: A long-term study covering two physiological challenges. Frontiers in Microbiology 13:1000750. doi: 10.3389/fmicb.2022.1000750
Brandt A, Baumann A, Hernandez-Arriaga A, Jung F, Nier A, Staltner R, Rajcic D, Schmeer C, Witte OW, Wessner B, Franzke B, Wagner K-H, Camarinha-Silva A, Bergheim I (2022). Impairments of intestinal arginine and NO metabolisms trigger aging-associated intestinal barrier dysfunction and `inflammaging´  Redox Biology 102528, doi:10.1016/j.redox.2022.102528

Roth C, Sims T, Rodehutscord M, Seifert J, Camarinha-Silva, A. The active core microbiota of two high-yielding laying hen breeds fed with different levels of calcium and phosphorus (2022) Frontiers in Physiology, doi: 10.3389/fphys.2022.951350

Künzel S, Yergaliyev T, Wild KJ, Philippi H, Petursdottir AH, Gunnlaugsdottir H, Reynolds CK, Humphries DJ, Camarinha-Silva A ,Rodehutscord M (2022) Methane reduction potential of brown seaweeds and their influence on nutrient degradation and microbiota composition in a rumen simulation technique. Frontiers in Microbiology 13: doi:10.3389/fmicb.2022.889618
Iqbal MA, Reyer H, Oster M, Hadlich F, Trakooljul N, Perdomo-Sabogal A, Schmucker S, Stefanski V, Roth C, Camarinha-Silva A, Huber K, Sommerfeld V, Rodehutscord M, Wimmers K, Ponsuksili S (2022) Multi-omics reveals different strategies in the immune and metabolic systems of high-yielding strains of laying hens. Frontiers in Genetics 13 doi:10.3389/fgene.2022.858232
Haas V, Vollmar S, Preuß S, Rodehutscord M, Camarinha-Silva A ,Bennewitz J (2022) Composition of the ileum microbiota is a mediator between the host genome and phosphorus utilization and other efficiency traits in Japanese quail (Coturnix japonica). Genetics Selection Evolution 54:1 20 doi: 10.1186/s12711-022-00697-8

2021

Tröscher-Mußotter JB, Saenz JS, Grindler S, Meyer J, Kononov SU, Mezger B, Borda-Molina D,  Frahm J, Daenicke S, Camarinha-Silva A, Huber K, Seifert J Microbiome clusters disclose physiologic variances in dairy cows challenged by calving and lipopolysaccharides. mSystems 6:5 e0085621. doi:10.1128/mSystems.00856-21
Baumann A, Nier A, Hernández-Arriaga A, Brandt A, Lorenzo Pisarello, MJ, Jin CJ, Pilar E, Camarinha-Silva A, Schattenberg JM, Bergheim I (2021). Toll-like receptor 1 as a possible target in non-alcoholic fatty liver disease. Scientific Reports, 11(1), 17815.
doi:10.1038/s41598-021-97346-9

Siegert W, Krieg J, Sommerfeld V, Borda-Molina D, Feuerstein D, Camarinha-Silva A,  Rodehutscord M (2021). Phytase supplementation effects on amino acid digestibility in broiler chickens are influenced by dietary calcium concentrations but not by acid-binding capacity. Current Developments in Nutrition nzab103. https://doi.org/10.1093/cdn/nzab103

Amin N, Schwarzkopf S, Kinoshita A, Tröscher-Mußotter J, Dänicke S, Camarinha-Silva A, Huber K, Frahm J, Seifert J. (2021) Evolution of rumen and oral microbiota in calves is influenced by age and time of weaning. Animal Microbiome 3(1):31. https://doi.org/10.1186/s42523-021-00095-3

Baumann A, Hernández-Arriaga A, Brandt A, Sánchez V, Nier A, Jung F, Kehm R, Höhn A, Grune T, Frahm C, Witte OW, Camarinha-Silva A*, Bergheim I* " Microbiota profiling in aging-associated inflammation and liver degeneration International Journal of Medical Microbiology https://doi.org/10.1016/j.ijmm.2021.151500
Künzel S, Borda-Molina D, Zuber T, Hartung J, Siegert W, Feuerstein D, Camarinha-Silva A, Rodehutscord M "Relative phytase efficacy values as affected by response trait including ileal microbiota composition" Poultry Science doi.org/10.1016/j.psj.2021.101133
Borda-Molina D, Iffland H, Schmid M, Müller R, Schad S, Seifert J, Tetens J, Bessei W, Bennewitz J, Camarinha-Silva A (2021) “Gut microbial composition and predicted functions are not associated with feather pecking and antagonistic behavior in laying hens” Life 11(3):235.
https://doi.org/10.3390/life11030235
Borda-Molina D, Mátis G, Mackei M, Neogrády Z; Huber K, Seifert J, Camarinha-Silva A (2021) "Caeca microbial variation in broiler chickens as a result of dietary combinations using two cereal types, supplementation of crude protein and sodium butyrate" Frontiers in Microbiology 11(3453). doi:10.3389/fmicb.2020.617800
Ponsuksili S, Oster M, Reyer H, Hadlich F, Trakooljul N, Rodehutscord M, Camarinha-Silva A, Bennewitz J and Wimmers K (2021) “Genetic regulation and heritability of miRNA and mRNA expression link to phosphorus utilization and gut microbiome” Open Biology 11(2):200182. doi:10.1098/rsob.200182
Krieg J; Borda-Molina D; Siegert W; Sommerfeld V; Chi HP; Taheri HR; Feuerstein D; Camarinha-Silva A; Rodehutscord M (2021) "Effects of calcium level and source, acidification, and phytase on phytate degradation and the microbiota in the digestive tract of broiler chickens" Animal Microbiome 15;3(1):23. doi:10.1186/s42523-021-00083-7
Rajčić D, Baumann A, Hernández-Arriaga A, Brandt A, Nier A, Jin CJ, Sanchez V, Jung F, Camarinha-Silva A, Bergheim I (2021) "Citrulline attenuates the development of non-alcoholic steatohepatitis: Role of intestinal arginase" Redox Biology. 2021:101879. doi:10.1016/j.redox.2021.101879

2020

Borda-Molina D, Roth C, Hérnandez-Arriaga A, Rissi D, Vollmar S, Rodehutscord M, Bennewitz J, Camarinha-Silva A. (2020) “Effects on the Ileal Microbiota of Phosphorus and Calcium Utilization, Bird Performance, and Gender in Japanese Quail” Animals 10, 885

Doi: 10.3390/ani10050885

Sommerfeld V, Huber K, Bennewitz J, Camarinha-Silva A, Hasselmann M, Ponsuksili S, Seifert J, Stefanski V, Wimmers K, Rodehutscord M (2020) Phytate degradation, myo-inositol release, and utilization of phosphorus and calcium by two strains of laying hens in five production periods. Poultry Science.

Doi: 10.1016/j.psj.2020.08.064


Sommerfeld V, Omotoso, AO, Oster, M, Reyer H, Camarinha-Silva A, Hasselmann M, Huber K, Ponsuksili S, Seifert J, Stefanski V, Wimmers K, Rodehutscord M (2020) “Phytate Degradation, Transcellular Mineral Transporters, and Mineral Utilization by Two Strains of Laying Hens as Affected by Dietary Phosphorus and Calcium” animals 10, 1736.

Doi: 10.3390/ani10101736

Weishaar R, Wellmann R, Camarinha-Silva A, Rodehutscord M, Bennewitz J (2020) “Selecting the hologenome to breed for an improved feed efficiency in pigs-A novel selection index“ Journal of  Animal Breeding and Genetics 137:14-22.

Doi: 10.1111/jbg.12447

Vollmar S, Wellmann R, Borda-Molina D, Rodehutscord M, Camarinha-Silva A and Bennewitz J (2020). "The Gut Microbial Architecture of Efficiency Traits in the Domestic Poultry Model Species Japanese Quail (Coturnix japonica) Assessed by Mixed Linear Models G3: Genes, Genomes, Genetics

Doi: 10.1534/g3.120.401424

Ponsuksili S, Reyer H, Hadlich F, Weber F, Trakooljul N, Oster M, Siengdee P, Muráni E, Rodehutscord M, Camarinha-Silva A, Bennewitz J, Wimmers K. (2020) “Identification of the key molecular drivers of phosphorus utilization based on host miRNA-mRNA and gut microbiome interactions” International Journal of Molecular Sciences 21(8), 2818.

Doi:10.3390/ijms21082818

 

2019

Hernández-Arriaga A, Baumann A, Witte OW, Frahm C, Bergheim I and Camarinha-Silva A (2019). Changes in Oral Microbial Ecology of C57BL/6 Mice at Different Ages Associated with Sampling Methodology. Microorganisms 7(9): 283.

Doi:10.3390/microorganisms7090283

Künzel S, Borda-Molina D, Kraft R, Sommerfeld V, Kühn I, Camarinha Silva A, Rodehutscord M  (2019). Impact of coccidiostat and phytase supplementation on gut microbiota composition and phytate degradation in broiler chickens. in: Animal Microbiome 2:1
Doi: 10.1186/s42523-019-0006-2

Brandt A, Hernández-Arriaga A, Kehm R, Sánchez V, Jin CJ, Nier A, Baumann A, Camarinha-Silva A and Bergheim I (2019). Metformin attenuates the onset of non-alcoholic fatty liver disease and affects intestinal microbiota and barrier in small intestine. Scientific Reports 9(1): 6668
Doi: 10.3390/microorganisms7050123

Pineda-Quiroga C, Borda-Molina D, Chaves-Moreno D, Ruiz R, Atxaerandio R, Camarinha-Silva A, García-Rodríguez A  (2019). Microbial and Functional Profile of the Ceca from Laying Hens Affected by Feeding Prebiotics, Probiotics, and Synbiotics. Microorganisms 7(5): 123
Doi: 10.3390/microorganisms7050123

Borda-Molina D, Zuber T, Siegert W, Camarinha-Silva A, Feuerstein D, Rodehutscord M (2019). Effects of protease and phytase supplements on small intestinal microbiota and amino acid digestibility in broiler chickens. Poultry Science 97(7): 2906-2918

doi: 10.3382/ps/pez038

2018

Borda-Molina D, Seifert J and Camarinha-Silva A (2018): Current perspectives of the chicken gastrointestinal tract and its microbiome, in: Computational and Structural Biotechnology Journal
Doi 10.1016/j.csbj.2018.03.002

Zeitschriftenbeitrag (peer-reviewed)

Trautvetter U, Camarinha-Silva A, Jahreis G, Lorkowski S and Glei M (2018): High phosphorus intake and gut-related parameters – results of a randomized placebo-controlled human intervention study, in: Nutrition Journal
Doi: 10.1186/s12937-018-0331-4

Zeitschriftenbeitrag (peer-reviewed)

Camarinha-Silva A., Fricke W.F (2018): Molecular Microbiome Analysis, in: The Gut Microbiome in Health and Disease
Doi: 10.1007/978-3-319-90545-7_4

Buchbeitrag

2017

Pineda-Quiroga C, Camarinha-Silva A, Atxaerandioa R, Ruiz R, García-Rodríguez A. (2017): Changes in broiler performance, duodenal histomorphometry, and caeca microbiota composition in response to wheat-barley based diets supplemented with non-antibiotic additives, in: Animal Feed Science and Technology
Doi: 10.1016/j.anifeedsci.2017.09.002

Zeitschriftenbeitrag (peer-reviewed)
Tilocca B, Burbach K, Heyer CME, Hoelzle LE, Mosenthin R, Stefanski V, Camarinha-Silva A and Seifert J (2017): Dietary changes in nutritional studies shape the structural and functional composition of the pigs’ fecal microbiome - from days to weeks, in: Microbiome
Doi: 10.1186/s40168-017-0362-7		Zeitschriftenbeitrag (peer-reviewed)

Kaewtapee C, Burbach K, Tomforde G, Hartinger T, Camarinha-Silva A, Heinritz S, Seifert J, Wiltafsky M, Mosenthin R and Rosenfelder-Kuon P (2017): Effect of Bacillus subtilis and Bacillus licheniformis supplementation in diets with low- and high-protein content on ileal crude protein and amino acid digestibility and intestinal microbiota composition of growing pigs, in: Journal of Animal Science and Biotechnology
Doi:  10.1186/s40104-017-0168-2

Zeitschriftenbeitrag (peer-reviewed)
Pineda-Quiroga, C, Camarinha-Silva, A, Borda-Molina, D, Atxaerandio, R, Ruiz, R, & García-Rodríguez, A. (2017): Feeding broilers with dry whey powder and whey protein concentrate affected productive performance, ileal digestibility of nutrients and cecal microbiota community
Doi: 10.1017/S1751731117002208		 Zeitschriftenbeitrag (peer-reviewed)
Deusch S, Camarinha-Silva A, Conrad J, Beifuss U, Rodehutscord M, Seifert J. (2017) A structural and functional elucidation of the rumen microbiome influenced by various diets and microenvironments. Frontiers in Microbiology 8(1605) 
Doi: 10.3389/fmicb.2017.01605
Camarinha-Silva A, Maushammer M, Wellmann R, Vital M, Preuss S and Bennewitz J (2017): Host genome influence on gut microbial composition and microbial prediction of complex traits in pigs, in: Genetics
Doi: 10.1534/genetics.117.200782		Zeitschriftenbeitrag (peer-reviewed)

Burbach K, Strang EJP, Mosenthin R, Camarinha-Silva A and Seifert J (2017): Porcine intestinal microbiota is shaped by diet composition based on rye or triticale, in: Journal of Applied Microbiology
Doi: 10.1111/jam.13595

Zeitschriftenbeitrag (peer-reviewed)

2016

Burbach K, Seifert J, Pieper DH, Camarinha-Silva A (2016): Evaluation of DNA extraction kits and phylogenetic diversity of the porcine gastrointestinal tract based on Illumina sequencing of two hypervariable regions, in: MicrobiologyOpen
Doi: 10.1002/mbo3.312

 Zeitschriftenbeitrag (peer-reviewed)
Borda-Molina D, Vital M, Sommerfeld V, Rodehutscord M and Camarinha-Silva A (2016): Insights into broilers’ gut microbiota fed with phosphorus, calcium, and phytase supplemented diets, in: Frontiers in Microbiology
Doi: 10.3389/fmicb.2016.02033		Zeitschriftenbeitrag (peer-reviewed)
Heinritz SN, Weiss E, Eklund M, Aumiller T, Louis S, Rings A, Messner S, Camarinha-Silva A, Seifert J, Bischoff SC, Mosenthin R (2016): Intestinal microbiota and microbial metabolites are changed in a pig model fed a high-fat/low-fiber or a low-fat/high-fiber diet, in: PloS ONE
Doi: 10.1371/journal.pone.0154329		Zeitschriftenbeitrag (peer-reviewed)
Borda-Molina D, Vital M, Sommerfeld V, Rodehutscord M, Camarinha Silva A. (2016): Spatial variation in the gut microbiota of broiler chickens fed diets supplemented or not with calcium, phosphorus and phytase. Proceedings of the Society of Nutrition Physiology
ISBN: 978-3-7690-4109-5 		Kongressbeitrag

2015

Deusch S, Tilocca B, Camarinha-Silva A, Seifert J (2015): News in livestock research — use of Omics-technologies to study the microbiota in the gastrointestinal tract of farm animals, in: Computational and Structural Biotechnology Journal
Doi: 10.1016/j.csbj.2014.12.005		Zeitschriftenbeitrag
(peer-reviewed)
Witzig M, Camarinha da Silva A, Green-Engert R, Hoelzle K, Zeller E, Seifert J, Hoelzle LE and Rodehutscord M (2015): Spatial variation of the gut microbiota in Broiler chickens as affected by dietary available phosphorus and assessed by T-RFLP analysis and 454 pyrosequencing, in: PLOS ONE
Doi: 10.1371/journal.pone.0143442		Zeitschriftenbeitrag (peer-reviewed)